DATASET_COLORSTRIP #In colored strip datasets, each ID is associated to a color box/strip and can have an optional label. Color can be specified in hexadecimal, RGB or RGBA notation. When using RGB or RGBA notation, you cannot use COMMA as the dataset separator #lines starting with a hash are comments and ignored during parsing #=================================================================# # MANDATORY SETTINGS # #=================================================================# #select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file (except in the SEPARATOR line, which uses space). #SEPARATOR TAB #SEPARATOR COMMA SEPARATOR SPACE #label is used in the legend table (can be changed later) DATASET_LABEL ZoomTwo #dataset color (can be changed later) COLOR #000000 #=================================================================# # OPTIONAL SETTINGS # #=================================================================# #If COLOR_BRANCHES is set to 1, branches of the tree will be colored according to the colors of the strips above the leaves. #When all children of a node have the same color, it will be colored the same, ie. the color will propagate inwards towards the root. COLOR_BRANCHES 0 #each dataset can have a legend, which is defined below #for each row in the legend, there should be one shape, color and label #shape should be a number between 1 and 5: #1: square #2: circle #3: star #4: right pointing triangle #5: left pointing triangle LEGEND_TITLE Taxonomy LEGEND_SHAPES 1 1 1 1 1 1 1 1 1 1 1 LEGEND_COLORS #8dd3c7 #ffff33 #fb8072 #bebada #80b1d3 #fdb462 #b3de69 #fccde5 #bc80bd #d9d9d9 #ccebc5 LEGEND_LABELS Amoebozoa Other_Ophistokonts Rhodophyta Glaucocystophyceae Cryptophyta Haptophyta Stramenopiles Alveolata Rhizaria Apusozoa Excavata #=================================================================# # all other optional settings can be set or changed later # # in the web interface (under 'Datasets' tab) # #=================================================================# #width of the colored strip STRIP_WIDTH 50 #left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap. #MARGIN 5 #border width; if set above 0, a border of specified width (in pixels) will be drawn around the color strip #BORDER_WIDTH 2 #border color; used when BORDER_WIDTH is above 0 #BORDER_COLOR #969696 #always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display. #SHOW_INTERNAL 1 #Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages #=================================================================# # Actual data follows after the DATA keyword # #=================================================================# DATA MMETSP0413_3845_0_1_1_20593-136452-Filamoeba_nolandi-Amoebozoa #8dd3c7 Amoebozoa XP_638708.1-44689-Dictyostelium_discoideum-Amoebozoa #8dd3c7 Amoebozoa XP_003289888.1-5786-Dictyostelium_purpureum-Amoebozoa #8dd3c7 Amoebozoa XP_012751566.1-361139-Acytostelium_subglobosum-Amoebozoa #8dd3c7 Amoebozoa XP_020429483.1-2086695-Heterostelium_album-Amoebozoa #8dd3c7 Amoebozoa XP_004355670.1-261658-Cavenderia_fasciculata-Amoebozoa #8dd3c7 Amoebozoa MMETSP0417_4656_6_1_1_2980-242540-Mayorella-Amoebozoa #8dd3c7 Amoebozoa MMETSP0168_3096_0_2_1_43357-95228-Vannella-Amoebozoa #8dd3c7 Amoebozoa XP_004344980.1-192875-Capsaspora_owczarzaki-Other_Ophistokonts #ffff33 Other_Ophistokonts XP_014159707.1-72019-Sphaeroforma_arctica-Other_Ophistokonts #ffff33 Other_Ophistokonts XP_001743079.1-81824-Monosiga_brevicollis-Other_Ophistokonts #ffff33 Other_Ophistokonts XP_004998967.1-946362-Salpingoeca_rosetta-Other_Ophistokonts #ffff33 Other_Ophistokonts XP_009497615.1-691883-Fonticula_alba-Other_Ophistokonts #ffff33 Other_Ophistokonts MMETSP0109_13333_4_1_1_25634-29199-Chlorarachnion_reptans-Rhizaria #bc80bd Rhizaria MMETSP0112_3092_0_1_1_19378-91324-Lotharella_globosa-Rhizaria #bc80bd Rhizaria MMETSP0042_7106_0_1_1_22277-1561963-Amorphochlora_amoebiformis-Rhizaria #bc80bd Rhizaria MMETSP0042_7106_0_2_1_22280-1561963-Amorphochlora_amoebiformis-Rhizaria #bc80bd Rhizaria MMETSP0110_13676_0_1_1_19378-67808-Gymnochlora-Rhizaria #bc80bd Rhizaria MMETSP1318_12802_25_1_1_23487-552666-Partenskyella_glossopodia-Rhizaria #bc80bd Rhizaria MMETSP0109_2781_0_1_1_19564-29199-Chlorarachnion_reptans-Rhizaria #bc80bd Rhizaria MMETSP0042_7871_0_1_1_20340-1561963-Amorphochlora_amoebiformis-Rhizaria #bc80bd Rhizaria MMETSP0110_3827_1_1_1_14916-67808-Gymnochlora-Rhizaria #bc80bd Rhizaria MMETSP0758_3764_17_1_1_15142-63605-Percolomonas_cosmopolitus-Excavata #ccebc5 Excavata MMETSP0759_3057_3_1_1_5982-63605-Percolomonas_cosmopolitus-Excavata #ccebc5 Excavata XP_008857559.1-412467-Entamoeba_nuttalli-Amoebozoa #8dd3c7 Amoebozoa XP_654639.1-5759-Entamoeba_histolytica-Amoebozoa #8dd3c7 Amoebozoa XP_004256558.1-33085-Entamoeba_invadens-Amoebozoa #8dd3c7 Amoebozoa XP_001610830.1-5865-Babesia_bovis-Alveolata #fccde5 Alveolata XP_012766535.1-5866-Babesia_bigemina-Alveolata #fccde5 Alveolata XP_028866732.1-189622-Babesia_ovata-Alveolata #fccde5 Alveolata XP_028870014.1-462227-Babesia_sp_Xinjiang-Alveolata #fccde5 Alveolata XP_004833449.1-5872-Theileria_equi-Alveolata #fccde5 Alveolata XP_953907.1-5874-Theileria_annulata-Alveolata #fccde5 Alveolata XP_766387.1-5875-Theileria_parva-Alveolata #fccde5 Alveolata XP_012649439.1-5868-Babesia_microti-Alveolata #fccde5 Alveolata XP_001608529.1-5855-Plasmodium_vivax-Alveolata #fccde5 Alveolata XP_004221397.1-5827-Plasmodium_cynomolgi-Alveolata #fccde5 Alveolata XP_019913666.1-208452-Plasmodium_coatneyi-Alveolata #fccde5 Alveolata XP_002261756.1-5850-Plasmodium_knowlesi-Alveolata #fccde5 Alveolata XP_012337413.1-5857-Plasmodium_fragile-Alveolata #fccde5 Alveolata XP_028542530.1-77519-Plasmodium_gonderi-Alveolata #fccde5 Alveolata XP_028530055.1-5849-Plasmodium_gallinaceum-Alveolata #fccde5 Alveolata XP_028532109.1-85471-Plasmodium_relictum-Alveolata #fccde5 Alveolata XP_028538584.1-880535-Plasmodium_sp_gorilla_cl-Alveolata #fccde5 Alveolata XP_012763276.2-5854-Plasmodium_reichenowi-Alveolata #fccde5 Alveolata XP_018641628.1-647221-Plasmodium_gaboni-Alveolata #fccde5 Alveolata XP_001347516.1-5833-Plasmodium_falciparum-Alveolata #fccde5 Alveolata XP_028862126.1-5858-Plasmodium_malariae-Alveolata #fccde5 Alveolata XP_008625681.1-5860-Plasmodium_vinckei-Alveolata #fccde5 Alveolata XP_744718.2-5825-Plasmodium_chabaudi-Alveolata #fccde5 Alveolata XP_022712270.1-5821-Plasmodium_berghei-Alveolata #fccde5 Alveolata XP_022811657.1-5861-Plasmodium_yoelii-Alveolata #fccde5 Alveolata XP_008817254.1-52288-Plasmodium_inui-Alveolata #fccde5 Alveolata XP_018637007.1-5811-Toxoplasma_gondii-Alveolata #fccde5 Alveolata XP_003883059.1-29176-Neospora_caninum-Alveolata #fccde5 Alveolata XP_029217235.1-94643-Besnoitia_besnoiti-Alveolata #fccde5 Alveolata XP_026191490.1-88456-Cyclospora_cayetanensis-Alveolata #fccde5 Alveolata XP_013230799.1-5802-Eimeria_tenella-Alveolata #fccde5 Alveolata XP_628179.1-5807-Cryptosporidium_parvum-Alveolata #fccde5 Alveolata XP_666977.1-237895-Cryptosporidium_hominis-Alveolata #fccde5 Alveolata XP_011131134.1-110365-Gregarina_niphandrodes-Alveolata #fccde5 Alveolata MMETSP1451_12741_9_1_1_11145-1169540-Vitrella_brassicaformis-Alveolata #fccde5 Alveolata 1kpIKWM2004838-2782-Gracilariopsis_lemaneifor-Rhodophyta #fb8072 Rhodophyta 1kpPWKQ2002050-33673-Gracilaria_sp-Rhodophyta #fb8072 Rhodophyta 1kpFTRP2011953-1172980-Gracilaria_chouae-Rhodophyta #fb8072 Rhodophyta 1kpLJPN2000916-203266-Gracilaria_blodgettii-Rhodophyta #fb8072 Rhodophyta 1kpVNAL2001370-2608709-Agarophyton_vermiculophyl-Rhodophyta #fb8072 Rhodophyta 1kpPYDB2028211-118369-Grateloupia_catenata-Rhodophyta #fb8072 Rhodophyta 1kpIKIZ2003395-118374-Grateloupia_livida-Rhodophyta #fb8072 Rhodophyta 1kpZJOJ2000136-31455-Grateloupia_filicina-Rhodophyta #fb8072 Rhodophyta 1kpURSB2004160-118375-Grateloupia_turuturu-Rhodophyta #fb8072 Rhodophyta 1kpVZWX2022968-218449-Ceramium_kondoi-Rhodophyta #fb8072 Rhodophyta 1kpUYFR2005856-396806-Symphyocladia_latiuscula-Rhodophyta #fb8072 Rhodophyta 1kpXAXW2002871-2608613-Melanothamnus_japonicus-Rhodophyta #fb8072 Rhodophyta 1kpYSBD2002650-189631-Heterosiphonia_pulchra-Rhodophyta #fb8072 Rhodophyta XP_005711824.1-2769-Chondrus_crispus-Rhodophyta #fb8072 Rhodophyta 1kpWEJN2005472-95356-Mazzaella_japonica-Rhodophyta #fb8072 Rhodophyta 1kpSBLT2020124-42017-Gloiopeltis_furcata-Rhodophyta #fb8072 Rhodophyta 1kpBWVJ2004387-88415-Betaphycus_philippinensis-Rhodophyta #fb8072 Rhodophyta 1kpJEBK2024927-305493-Eucheuma_denticulatum-Rhodophyta #fb8072 Rhodophyta 1kpIEHF2018526-142491-Dumontia_simplex-Rhodophyta #fb8072 Rhodophyta MMETSP0011_4457_0_1_1_34775-101924-Rhodosorus_marinus-Rhodophyta #fb8072 Rhodophyta 1kpLLXJ2008031-139907-Chroodactylon_ornatum-Rhodophyta #fb8072 Rhodophyta 1kpZULJ2010107-2788-Pyropia_yezoensis-Rhodophyta #fb8072 Rhodophyta MMETSP0167_10198_6_2_1_20710-2801-Rhodella_maculata-Rhodophyta #fb8072 Rhodophyta MMETSP1353_3804_1_1_1_15476-1077150-Erythrolobus_australicus-Rhodophyta #fb8072 Rhodophyta XP_005702919.1-130081-Galdieria_sulphuraria-Rhodophyta #fb8072 Rhodophyta 1kpJJZR2007963-110510-Rhodochaete_parvula-Rhodophyta #fb8072 Rhodophyta MMETSP0312_6858_1_2_1_24517-31354-Compsopogon_caeruleus-Rhodophyta #fb8072 Rhodophyta MMETSP0308_9283_0_1_1_15899-38269-Gloeochaete_wittrockiana-Glaucocystophyceae #bebada Glaucocystophyceae 1kpJKHA2003160-77922-Cyanoptyche_gloeocystis-Glaucocystophyceae #bebada Glaucocystophyceae